Trust Engine/MCP Server

ammawla/encode-toolkit

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

35 starsPythonAGPL-3.0aiai-agentsai-biobioinformatics

REVIEWED77/100

Scanned 2026-06-08 · gemini v1

Dimension breakdown

Security

55/100

5 findings

Quality

98/100

1 finding

License

63/100

2 findings

Completeness

90/100

2 findings

Findings (10)

HIGH: 2MEDIUM: 1LOW: 4INFO: 3

HIGHsecurityPotential Path Traversal in File Operations
HIGHsecurityPotential Command Injection in External Tool Execution
MEDIUMlicenseAmbiguous Commercial Licensing Statement
LOWqualityLicense String Inconsistency
LOWlicenseMinor Inconsistency in License Identifier

Detailed file:line citations + recommended fixes are visible to the maintainer of this repo after claiming the listing.

Maintainer of this repo?

Claim this listing in 30 seconds with GitHub OAuth. You'll see detailed findings, get notified about matched bounties, and can trigger re-scans on demand.

Claim listing

Embed the badge.

Drop it into your README. Every view backlinks to this verification page.

Markdown

[![Archimedes Trust](https://archimedes.market/api/badge/ammawla/encode-toolkit.svg)](https://archimedes.market/r/ammawla/encode-toolkit)

HTML

<a href="https://archimedes.market/r/ammawla/encode-toolkit"><img src="https://archimedes.market/api/badge/ammawla/encode-toolkit.svg" alt="Archimedes Trust Verified"/></a>

Browse bounties

Find paid engineering work matching this skill set

Verify another repo

Free, 30 seconds

MCP integration

Surface bounties + verified engineers via MCP